feat: Add struct conversion code

lib/converter/date_time.ex

@@ -0,0 +1,86 @@
+defmodule Kindling.Converter.DateTime do
+  defstruct year: "",
+            month: "",
+            day: "",
+            hour: "",
+            minute: "",
+            second: "",
+            zone: ""
+
+  def parse(value) do
+    value
+    |> String.codepoints()
+    |> do_year(%__MODULE__{})
+    |> set_defaults()
+    |> to_iso_string()
+    |> DateTime.from_iso8601()
+  end
+
+  def to_iso_string(%{
+        year: year,
+        month: month,
+        day: day,
+        hour: hour,
+        minute: minute,
+        second: second,
+        zone: zone
+      }) do
+    "#{year}-#{month}-#{day}T#{hour}:#{minute}:#{second}#{zone}"
+  end
+
+  def set_defaults(%{
+        year: year,
+        month: month,
+        day: day,
+        hour: hour,
+        minute: minute,
+        second: second,
+        zone: zone
+      }) do
+    %__MODULE__{
+      year: format(year, "0000"),
+      month: format(month, "01"),
+      day: format(day, "01"),
+      hour: format(hour, "00"),
+      minute: format(minute, "00"),
+      second: format(second, "00"),
+      zone: if(zone == "", do: "Z", else: zone)
+    }
+  end
+
+  defp format("", default), do: default
+  defp format(string, default), do: String.pad_leading(string, String.length(default), "0")
+
+  def do_year([], data), do: data
+  def do_year(["-" | tail], data), do: do_month(tail, data)
+  def do_year([hd | tail], %{year: year} = data), do: do_year(tail, %{data | year: year <> hd})
+
+  def do_month([], data), do: data
+  def do_month(["-" | tail], data), do: do_day(tail, data)
+
+  def do_month([hd | tail], %{month: month} = data),
+    do: do_month(tail, %{data | month: month <> hd})
+
+  def do_day([], data), do: data
+  def do_day(["T" | tail], data), do: do_hour(tail, data)
+  def do_day([hd | tail], %{day: day} = data), do: do_day(tail, %{data | day: day <> hd})
+
+  def do_hour([], data), do: data
+  def do_hour([":" | tail], data), do: do_minute(tail, data)
+  def do_hour([hd | tail], %{hour: hour} = data), do: do_hour(tail, %{data | hour: hour <> hd})
+
+  def do_minute([], data), do: data
+  def do_minute([":" | tail], data), do: do_second(tail, data)
+
+  def do_minute([hd | tail], %{minute: minute} = data),
+    do: do_minute(tail, %{data | minute: minute <> hd})
+
+  def do_second([], data), do: data
+  def do_second([c | tail], data) when c in ["+", "-", "Z"], do: do_zone(tail, data)
+
+  def do_second([hd | tail], %{second: second} = data),
+    do: do_second(tail, %{data | second: second <> hd})
+
+  def do_zone([], data), do: data
+  def do_zone([hd | tail], %{zone: zone} = data), do: do_zone(tail, %{data | zone: zone <> hd})
+end

lib/kindling/client.ex

@@ -0,0 +1,43 @@
+defmodule Kindling.Client do
+  alias Kindling.Converter
+
+  defstruct [:base_url, :access_token, auth_mode: :bearer]
+
+  def read(client, resource_module, id, opts \\ []) do
+    base_uri = URI.parse(client.base_url)
+    uri = base_uri |> URI.append_path(resource_module.path()) |> URI.append_path("/#{id}")
+    more_headers = Keyword.get(opts, :headers, [])
+
+    headers = headers(client, more_headers)
+
+    uri
+    |> Req.get(headers: headers)
+    |> case do
+      {:ok, %{status: status} = response} when status >= 200 and status < 300 ->
+        Converter.convert(resource_module.version(), response.body)
+
+      other ->
+        other
+    end
+  end
+
+  def headers(client, more_headers) do
+    case client.auth_mode do
+      :open ->
+        [format_header() | more_headers]
+
+      _other ->
+        [auth_header(client) | [format_header() | more_headers]]
+    end
+  end
+
+  def auth_header(%{auth_mode: :bearer, access_token: token}),
+    do: {"Authorization", "Bearer #{token}"}
+
+  def auth_header(%{auth_mode: :basic, access_token: token}),
+    do: {"Authorization", "Basic #{token}"}
+
+  def format_header do
+    {"Accept", "application/json"}
+  end
+end

lib/kindling/config.ex

@@ -1,19 +1,3 @@
 defmodule Kindling.Config do
-  @default_embedded_resources [
+  def root_resources, do: Application.get_env(:kindling, :root_resources, ["Encounter"])
-    "Coding",
-    "Duration",
-    "Extension",
-    "Identifier",
-    "Meta",
-    "Element",
-    "CodeableConcept",
-    "Narrative",
-    "Period",
-    "Reference",
-    "ResourceList"
-  ]
-
-  def embedded_resources() do
-    Application.get_env(:kindling, :embedded_resources, @default_embedded_resources)
-  end
 end

lib/kindling/converter.ex

@@ -0,0 +1,89 @@
+defmodule Kindling.Converter do
+  alias Kindling.Schema.Resource
+
+  def convert(version_namespace, %{"resourceType" => resource_type} = resource_json) do
+    resource_module = Module.concat(version_namespace, Resource.class_name(resource_type))
+
+    structify(resource_module, resource_json)
+  end
+
+  def structify(resource_module, resource_json) do
+    Code.ensure_loaded!(resource_module)
+
+    atom_map =
+      resource_json
+      |> Enum.map(fn {key_string, value} ->
+        key_atom = key_string |> Recase.to_snake() |> String.to_existing_atom()
+        {key_atom, convert_field(resource_module, key_atom, value)}
+      end)
+      |> Map.new()
+
+    struct!(resource_module, atom_map)
+  end
+
+  def convert_field(resource_module, field, value) do
+    cond do
+      field in resource_module.__schema__(:associations) ->
+        convert_association(resource_module, field, value)
+
+      field in resource_module.__schema__(:embeds) ->
+        convert_embed(resource_module, field, value)
+
+      field in resource_module.__schema__(:fields) ->
+        cast_field(resource_module, field, value)
+
+      true ->
+        value
+    end
+  end
+
+  def cast_field(resource_module, field, value) do
+    type = resource_module.__schema__(:type, field)
+
+    do_cast_field(type, value)
+  end
+
+  defp do_cast_field(:utc_datetime_usec, value) do
+    case Kindling.Converter.DateTime.parse(value) do
+      {:ok, v, _} ->
+        v
+
+      other ->
+        other
+    end
+  end
+
+  defp do_cast_field(type, value) do
+    case Ecto.Type.cast(type, value) do
+      {:ok, v} ->
+        v
+
+      other ->
+        other
+    end
+  end
+
+  def convert_association(resource_module, field, value) do
+    %{cardinality: cardinality, related: type} = resource_module.__schema__(:association, field)
+
+    case cardinality do
+      :many ->
+        Enum.map(value, &structify(type, &1))
+
+      :one ->
+        structify(type, value)
+    end
+  end
+
+  def convert_embed(resource_module, field, value) do
+    %{cardinality: cardinality, related: type} = resource_module.__schema__(:embed, field)
+
+    case cardinality do
+      :many ->
+        Enum.map(value, &structify(type, &1))
+
+      :one ->
+        structify(type, value)
+    end
+  end
+end

lib/kindling/embed_template.eex

@@ -3,10 +3,10 @@ defmodule <%= @namespace %>.<%= @version %>.<%= class_name(@resource_name) %> do
   import Ecto.Changeset
 
   @fields [
-    <%= @all_fields |> Enum.map(fn name -> ~s("#{Recase.to_snake(name)}") end) |> Enum.join(",\n") %>
+    <%= @all_fields |> Enum.map(fn name -> ~s(:#{Recase.to_snake(name)}) end) |> Enum.join(",\n") %>
   ]
   @required_fields [
-    <%= @required_fields |> Enum.map(fn name -> ~s("#{Recase.to_snake(name)}") end) |> Enum.join(",\n") %>
+    <%= @required_fields |> Enum.map(fn name -> ~s(:#{Recase.to_snake(name)}) end) |> Enum.join(",\n") %>
   ]
 
   embedded_schema do
@@ -21,11 +21,11 @@ defmodule <%= @namespace %>.<%= @version %>.<%= class_name(@resource_name) %> do
     <%= if @properties.enum != [] do %># Enum<% end %>
     <%= for {name, df, _} <- @properties.enum do %>field :<%= Recase.to_snake(name) %>, Ecto.Enum, values: <%= inspect(df["enum"] |> Enum.map(&Recase.to_snake(&1)) |> Enum.map(&String.to_atom/1)) %>
     <% end %>
-    <%= if @properties.embed_one != [] do %># Embed One<% end %>
+    <%= if @properties.embeds_one != [] do %># Embed One<% end %>
-    <%= for {name, df, _} <- @properties.embeds_one do %>embed_one :<%= Recase.to_snake(name) %>, <%= @namespace %>.<%= @version %>.<%= ref_to_class_name(df["$ref"]) %>
+    <%= for {name, df, _} <- @properties.embeds_one do %>embeds_one :<%= Recase.to_snake(name) %>, <%= @namespace %>.<%= @version %>.<%= ref_to_class_name(df["$ref"]) %>
     <% end %>
-    <%= if @properties.embed_many != [] do %># Embed Many<% end %>
+    <%= if @properties.embeds_many != [] do %># Embed Many<% end %>
-    <%= for {name, df, _} <- @properties.embed_many do %>embed_many :<%= Recase.to_snake(name) %>, <%= @namespace %>.<%= @version %>.<%= ref_to_class_name(df["$ref"]) %>
+    <%= for {name, df, _} <- @properties.embeds_many do %>embeds_many :<%= Recase.to_snake(name) %>, <%= @namespace %>.<%= @version %>.<%= ref_to_class_name(df["items"]["$ref"]) %>
     <% end %>
     <%= if @properties.has_one != [] do %># Has One<% end %>
     <%= for {name, df, _} <- @properties.has_one do %>has_one :<%= Recase.to_snake(name) %>, <%= @namespace %>.<%= @version %>.<%= ref_to_class_name(df["$ref"]) %>
@@ -33,9 +33,6 @@ defmodule <%= @namespace %>.<%= @version %>.<%= class_name(@resource_name) %> do
     <%= if @properties.has_many != [] do %># Has Many<% end %>
     <%= for {name, df, _} <- @properties.has_many do %>has_many :<%= Recase.to_snake(name) %>, <%= @namespace %>.<%= @version %>.<%= ref_to_class_name(df["items"]["$ref"]) %>
     <% end %>
-    <%= if @backlinks != [] do %># belongs_to<% end %>
-    <%= for name <- @backlinks do %>belongs_to :<%= Recase.to_snake(name) %>, <%= @namespace %>.<%= @version %>.<%= class_name(name) %>
-    <% end %>
   end
 
   def base_changeset(data \\ %__MODULE__{}, attrs) do

lib/kindling/schema.ex

@@ -1,5 +1,4 @@
 defmodule Kindling.Schema do
-  alias Kindling.Config
   alias Kindling.Version
   alias Kindling.Schema.Resource
 
@@ -23,7 +22,6 @@ defmodule Kindling.Schema do
 
     defs =
       schema["definitions"]
-      |> Map.drop(Config.embedded_resources())
       |> Enum.reduce(schema["definitions"], fn {name, df}, definitions ->
         refs = Resource.refs(df)
 
@@ -38,10 +36,14 @@ defmodule Kindling.Schema do
     Map.put(schema, "definitions", defs)
   end
 
-  def refs_recursive(schema, root_name) do
+  def refs_recursive(schema, root_name) when is_binary(root_name) do
     do_recurse(schema, MapSet.new([root_name]), [root_name])
   end
 
+  def refs_recursive(schema, roots) when is_list(roots) do
+    do_recurse(schema, MapSet.new(roots), roots)
+  end
+
   defp do_recurse(_schema, visited, []), do: visited
 
   defp do_recurse(schema, visited, [hd | tail]) do

lib/kindling/schema/resource.ex

@@ -1,18 +1,25 @@
 defmodule Kindling.Schema.Resource do
-  alias Kindling.Config
+  @empty_properties %{
-
+    array: [],
-  @empty_properties %{array: [], const: [], has_one: [], has_many: [], enum: [], value: []}
+    const: [],
+    embeds_one: [],
+    embeds_many: [],
+    has_one: [],
+    has_many: [],
+    enum: [],
+    value: []
+  }
 
   def properties(df) do
     df["properties"]
   end
 
-  def grouped_properties(df) do
+  def grouped_properties(df, roots) do
     properties =
       (df["properties"] || %{})
       |> Map.delete("id")
       |> Enum.reject(&is_element/1)
-      |> Enum.map(fn {key, value} -> {key, value, property_type(value)} end)
+      |> Enum.map(fn {key, value} -> {key, value, property_type(value, roots)} end)
       |> Enum.group_by(fn {_key, _value, type} ->
         type
       end)
@@ -23,7 +30,7 @@ defmodule Kindling.Schema.Resource do
   def all_fields(df) do
     (df["properties"] || %{})
     |> Enum.filter(fn {_name, definition} ->
-      property_type(definition) in [:array, :enum, :value]
+      property_type(definition, []) in [:array, :enum, :value]
     end)
     |> Enum.map(fn {name, _} -> name end)
   end
@@ -32,7 +39,7 @@ defmodule Kindling.Schema.Resource do
     df
     |> required()
     |> Enum.filter(fn {_name, definition} ->
-      property_type(definition) in [:array, :enum, :value]
+      property_type(definition, []) in [:array, :enum, :value]
     end)
     |> Enum.map(fn {name, _} -> name end)
   end
@@ -45,37 +52,35 @@ defmodule Kindling.Schema.Resource do
     key in df["required"]
   end
 
-  def property_type(%{"const" => _}), do: :const
+  def property_type(%{"const" => _}, _roots), do: :const
 
-  for embed <- Config.embedded_resources() do
+  def property_type(%{"$ref" => "#/definitions/" <> name}, roots) do
-    dbg(embed)
-
-    def property_type(%{"$ref" => "#/definitions/" <> unquote(embed)}), do: :embed_one
-
-    def property_type(%{"items" => %{"$ref" => "#/definitions/" <> unquote(embed)}}) do
-      :embed_many
-    end
-  end
-
-  def property_type(%{"$ref" => "#/definitions/" <> name}) do
     if is_class_name(name) do
-      :has_one
+      if name in roots do
+        :has_one
+      else
+        :embeds_one
+      end
     else
       :value
     end
   end
 
-  def property_type(%{"items" => %{"$ref" => "#/definitions/" <> name}}) do
+  def property_type(%{"items" => %{"$ref" => "#/definitions/" <> name}}, roots) do
     if is_class_name(name) do
-      :has_many
+      if name in roots do
+        :has_many
+      else
+        :embeds_many
+      end
     else
       :array
     end
   end
 
-  def property_type(%{"items" => %{"enum" => _}}), do: :array
+  def property_type(%{"items" => %{"enum" => _}}, _roots), do: :array
-  def property_type(%{"enum" => _}), do: :enum
+  def property_type(%{"enum" => _}, _roots), do: :enum
-  def property_type(_), do: :value
+  def property_type(_, _roots), do: :value
 
   def refs(df) do
     (df["properties"] || %{})
@@ -95,10 +100,16 @@ defmodule Kindling.Schema.Resource do
   end
 
   def is_class_name(name) do
-    !(name in Config.embedded_resources()) && Regex.match?(~r/^[A-Z]/, name)
+    Regex.match?(~r/^[A-Z]/, name)
   end
 
   def is_element({_name, %{"$ref" => "#/definitions/Element"}}), do: true
   def is_element({name, %{"items" => items}}), do: is_element({name, items})
   def is_element(_), do: false
+
+  def ref_to_class_name("#/definitions/" <> name),
+    do: class_name(name)
+
+  def class_name(name),
+    do: name |> String.split("_") |> Enum.map(&Recase.to_pascal/1) |> Enum.join(".")
 end

lib/kindling/template.eex

@@ -3,10 +3,10 @@ defmodule <%= @namespace %>.<%= @version %>.<%= class_name(@resource_name) %> do
   import Ecto.Changeset
 
   @fields [
-    <%= @all_fields |> Enum.map(fn name -> ~s("#{Recase.to_snake(name)}") end) |> Enum.join(",\n") %>
+    <%= @all_fields |> Enum.map(fn name -> ~s(:#{Recase.to_snake(name)}) end) |> Enum.join(",\n") %>
   ]
   @required_fields [
-    <%= @required_fields |> Enum.map(fn name -> ~s("#{Recase.to_snake(name)}") end) |> Enum.join(",\n") %>
+    <%= @required_fields |> Enum.map(fn name -> ~s(:#{Recase.to_snake(name)}) end) |> Enum.join(",\n") %>
   ]
 
   @primary_key {:id, :binary_id, autogenerate: true}
@@ -22,11 +22,11 @@ defmodule <%= @namespace %>.<%= @version %>.<%= class_name(@resource_name) %> do
     <%= if @properties.enum != [] do %># Enum<% end %>
     <%= for {name, df, _} <- @properties.enum do %>field :<%= Recase.to_snake(name) %>, Ecto.Enum, values: <%= inspect(df["enum"] |> Enum.map(&Recase.to_snake(&1)) |> Enum.map(&String.to_atom/1)) %>
     <% end %>
-    <%= if @properties.embed_one != [] do %># Embed One<% end %>
+    <%= if @properties.embeds_one != [] do %># Embed One<% end %>
-    <%= for {name, df, _} <- @properties.embed_one do %>embeds_one :<%= Recase.to_snake(name) %>, <%= @namespace %>.<%= @version %>.<%= ref_to_class_name(df["$ref"]) %>
+    <%= for {name, df, _} <- @properties.embeds_one do %>embeds_one :<%= Recase.to_snake(name) %>, <%= @namespace %>.<%= @version %>.<%= ref_to_class_name(df["$ref"]) %>
     <% end %>
-    <%= if @properties.embed_many != [] do %># Embed Many<% end %>
+    <%= if @properties.embeds_many != [] do %># Embed Many<% end %>
-    <%= for {name, df, _} <- @properties.embed_many do %>embed_many :<%= Recase.to_snake(name) %>, <%= @namespace %>.<%= @version %>.<%= ref_to_class_name(df["items"]["$ref"]) %>
+    <%= for {name, df, _} <- @properties.embeds_many do %>embeds_many :<%= Recase.to_snake(name) %>, <%= @namespace %>.<%= @version %>.<%= ref_to_class_name(df["items"]["$ref"]) %>
     <% end %>
     <%= if @properties.has_one != [] do %># Has One<% end %>
     <%= for {name, df, _} <- @properties.has_one do %>has_one :<%= Recase.to_snake(name) %>, <%= @namespace %>.<%= @version %>.<%= ref_to_class_name(df["$ref"]) %>
@@ -39,6 +39,9 @@ defmodule <%= @namespace %>.<%= @version %>.<%= class_name(@resource_name) %> do
     <% end %>
   end
 
+  def version, do: <%= @namespace %>.<%= @version %>
+  def path, do: "/<%= @resource_name %>"
+
   def base_changeset(data \\ %__MODULE__{}, attrs) do
     data
     |> cast(attrs, @fields)

lib/kindling/templates.ex

@@ -2,41 +2,41 @@ defmodule Kindling.Templates do
   require EEx
 
   import Kindling.Templates.Functions
+  import Kindling.Schema.Resource
 
-  alias Kindling.Config
   alias Kindling.Schema.Resource
 
   EEx.function_from_file(:def, :render, "lib/kindling/template.eex", [:assigns])
   EEx.function_from_file(:def, :render_embedded, "lib/kindling/embed_template.eex", [:assigns])
 
-  def resource_code(namespace, version, resource_name, resource) do
+  def resource_code(namespace, version, roots, resource_name, resource) do
     assigns = %{
       namespace: namespace,
       version: version,
       resource_name: resource_name,
-      properties: Resource.grouped_properties(resource),
+      properties: Resource.grouped_properties(resource, roots),
       all_fields: Resource.all_fields(resource),
       required_fields: Resource.required_fields(resource),
-      backlinks: resource["__backlinks"]
+      backlinks: Enum.filter(resource["__backlinks"], &(&1 in roots))
     }
 
-    if resource_name in Config.embedded_resources() do
+    if resource_name in roots do
       assigns
-      |> render_embedded()
+      |> render()
       |> Code.format_string!(file: "#{resource_name}.ex")
     else
       assigns
-      |> render()
+      |> render_embedded()
       |> Code.format_string!(file: "#{resource_name}.ex")
     end
   end
 
-  def write_code(namespace, version, resource_name, resource) do
+  def write_code(namespace, version, roots, resource_name, resource) do
     dir = Path.join(["lib", String.downcase(namespace), String.downcase(version)])
     file = Path.join([dir | to_source_file_name(resource_name)])
 
     File.mkdir_p!(Path.dirname(file))
-    File.write!(file, resource_code(namespace, version, resource_name, resource))
+    File.write!(file, resource_code(namespace, version, roots, resource_name, resource))
   end
 
   def to_source_file_name(resource_name) do

lib/kindling/templates/functions.ex

@@ -40,10 +40,4 @@ defmodule Kindling.Templates.Functions do
 
   def fhir_type_to_ecto(%{"type" => "array", "items" => items}),
     do: {:array, fhir_type_to_ecto(items)}
-
-  def ref_to_class_name("#/definitions/" <> name),
-    do: class_name(name)
-
-  def class_name(name),
-    do: name |> String.split("_") |> Enum.map(&Recase.to_pascal/1) |> Enum.join(".")
 end

lib/mix/tasks/kindling/generate_schemas.ex

@@ -6,22 +6,23 @@ defmodule Mix.Tasks.Kindling.GenerateSchemas do
 
   @impl Mix.Task
   def run(args) do
-    if Enum.count(args) != 3 do
+    if Enum.count(args) != 2 do
-      Mix.shell().error(
+      Mix.shell().error("usage: mix mix kindling.generate_schemas <namespace> <R5|R4|R3>")
-        "usage: mix mix kindling.generate_schemas <namespace> <R5|R4|R3> <root resource name>"
+
-      )
+      raise "Argument error."
     end
 
-    [namespace, version, root] = args
+    [namespace, version] = args
 
     schema = Kindling.Schema.schema_object(version)
+    roots = Kindling.Config.root_resources()
 
     to_generate =
-      Kindling.Schema.refs_recursive(schema, root)
+      Kindling.Schema.refs_recursive(schema, roots)
 
     Enum.each(
       to_generate,
-      &Kindling.Templates.write_code(namespace, version, &1, schema["definitions"][&1])
+      &Kindling.Templates.write_code(namespace, version, roots, &1, schema["definitions"][&1])
     )
   end
 end